PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010906718.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family LSD
Protein Properties Length: 173aa    MW: 18190.1 Da    PI: 8.6126
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010906718.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD147.82.3e-15731125
         zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                    C+gCr lL YPrGA++VRCa+C+tV
  XP_010906718.1  7 CNGCRSLLLYPRGATNVRCAICNTV 31
                    ************************9 PP

2zf-LSD144.42.7e-144670125
         zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                    CggCrtlL+Y+rGA  VRCa+C+t+
  XP_010906718.1 46 CGGCRTLLMYTRGANGVRCACCNTI 70
                    ***********************97 PP

3zf-LSD147.82.3e-1584108125
         zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                     Cg+C+t+L+YP+GApsV+Ca+C+ V
  XP_010906718.1  84 CGQCHTTLMYPYGAPSVKCAICHYV 108
                     **********************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR010531.6E-15434IPR005735Zinc finger, LSD1-type
PfamPF069433.7E-13731IPR005735Zinc finger, LSD1-type
SuperFamilySSF486956.98E-620107IPR011031Multihaem cytochrome
Gene3DG3DSA:3.90.10.104.5E-420107No hitNo description
TIGRFAMsTIGR010532.1E-164372IPR005735Zinc finger, LSD1-type
PfamPF069434.0E-124670IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010539.9E-1181110IPR005735Zinc finger, LSD1-type
PfamPF069433.0E-1484108IPR005735Zinc finger, LSD1-type
Sequence ? help Back to Top
Protein Sequence    Length: 173 aa     Download sequence    Send to blast
MQSQLVCNGC RSLLLYPRGA TNVRCAICNT VTSVPPPGME MSQLVCGGCR TLLMYTRGAN  60
GVRCACCNTI NLAQSANQVS HVSCGQCHTT LMYPYGAPSV KCAICHYVTN IGASNMRVPI  120
PAAHRPNEST PMPPSTSALG SRAQTVVVEN PMTVDESGKL VSNVVVGVTT GKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010906718.11e-123PREDICTED: protein LSD1-like
SwissprotQ6ASS23e-74LOL3_ORYSJ; Protein LOL3
TrEMBLM5WHS36e-88M5WHS3_PRUPE; Uncharacterized protein
STRINGGLYMA05G30490.18e-85(Glycine max)
STRINGGSMUA_Achr7P00950_0019e-85(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP134738124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20380.71e-67LSD family protein